Reference

Workflow Methods
hypeR()	Calculate enrichment of one or more signatures
hyp_show()	Convert a hyp object to a reactable table
hyp_dots()	Visualize hyp/multihyp objects as a dots plot
hyp_emap()	Visualize hyp/multihyp objects as an enrichment map
hyp_hmap()	Visualize hyp/multihyp objects as a hiearchy map
hyp_to_graph()	Convert a hyp object to an igraph object
hyp_to_excel()	Export hyp/multihyp object to excel
hyp_to_table()	Export hyp/multihyp object to table
hyp_to_rmd()	Export hyp object to rmarkdown
Data Methods
msigdb_version()	Get msigdbr package version number
msigdb_species()	Get msigdbr available species
msigdb_available()	Get msigdbr available genesets
msigdb_info()	Print msigdb gsets information
msigdb_download()	Download data from msigdb in the form of a named list
msigdb_gsets()	Download data from msigdb in the form of a gsets object
enrichr_available()	Get enrichr available genesets
enrichr_download()	Download data from enrichr in the form of a named list
enrichr_gsets()	Download data from enrichr in the form of a gsets object
hyperdb_available()	Check available data to download from hyperdb
hyperdb_rgsets()	Download data from hyperdb in the form of a rgsets object
hyperdb_gsets()	Download data from hyperdb
Markdown Modules
rctbl_hyp()	Reactable table for hyp objects
rctbl_mhyp()	Reactable table for multihyp objects
rctbl_build()	Reactable builder for hyp or mhyp objects
Shiny Modules
genesets_UI()	Shiny interface module for geneset selection
genesets_Server()	Shiny server module for geneset selection
R6 Objects
hyp	A hyp object
multihyp	A multihyp object
gsets	A genesets object
rgsets	A relational genesets object
Data Objects
wgcna	Co-expression Modules
limma	Differential Expression