A relational genesets object
A relational genesets object
gsets
genesetsA list of genesets where list names refers to geneset labels and values are geneset members represented as a vector
nodesA data frame of labeled nodes
edgesA data frame of directed edges
nameA character vector describing source of genesets
versionA character vector describing versioning
new()Create a rgsets object
rgsets$new( genesets, nodes, edges, name = "Custom", version = "", quiet = FALSE )
genesetsA list of genesets where list names refers to geneset labels and values are geneset members represented as a vector
nodesA data frame of labeled nodes
edgesA data frame of directed edges
nameA character vector describing source of genesets
versionA character vector describing versioning
quietUse true to silence warnings
A new rgsets object
print()Print relational genesets information
rgsets$print()
NULL
info()Returns versioning information
rgsets$info()
A character vector with name and version
reduce()Reduces genesets to a background distribution of symbols
rgsets$reduce(background)
backgroundA character vector of symbols
A rgsets object
subset()Subsets genesets on a character vector of labels
rgsets$subset(labels)
labelsA character vector of genesets
A rgsets object
clone()The objects of this class are cloneable with this method.
rgsets$clone(deep = FALSE)
deepWhether to make a deep clone.