Get msigdbr available genesets
msigdb_available(species = "Homo sapiens")
species | A species to determine gene symbols (refer to ?msigdbr::msigdbr for avilable species) |
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A dataframe of available genesets
msigdb_available("Homo sapiens")#> # A tibble: 22 x 2 #> Category Subcategory #> <chr> <chr> #> 1 C1 "" #> 2 C2 "CGP" #> 3 C2 "CP" #> 4 C2 "CP:BIOCARTA" #> 5 C2 "CP:KEGG" #> 6 C2 "CP:PID" #> 7 C2 "CP:REACTOME" #> 8 C2 "CP:WIKIPATHWAYS" #> 9 C3 "MIR:MIR_Legacy" #> 10 C3 "MIR:MIRDB" #> # … with 12 more rows