Export hyp/multihyp object to excel

Source: R/hyp_to_excel.R

Export hyp/multihyp object to excel

hyp_to_excel(hyp_obj, file_path, cols = NULL, versioning = TRUE)

Arguments

hyp_obj

A hyp or multihyp object
file_path

A file path
cols

Dataframe columns to include
versioning

Add sheet with versioning information

Examples

genesets <- msigdb_gsets("Homo sapiens", "C2", "CP:KEGG")

signature <- c("IDH3B","DLST","PCK2","CS","PDHB","PCK1","PDHA1","LOC642502",
               "PDHA2","LOC283398","FH","SDHD","OGDH","SDHB","IDH3A","SDHC",
               "IDH2","IDH1","OGDHL","PC","SDHA","SUCLG1","SUCLA2","SUCLG2")

hyp_obj <- hypeR(signature, genesets, background=2522)

hyp_to_excel(hyp_obj, file_path="pathways.xlsx")