Download data from msigdb in the form of a gsets object

Download data from msigdb in the form of a gsets object

msigdb_gsets(species, category, subcategory = "", clean = FALSE)

Arguments

species	A species to determine gene symbols (refer to ?msigdbr::msigdbr for avilable species)
category	Geneset category (refer to ?msigdbr::msigdbr for avilable categories)
subcategory	Geneset subcategory (refer to ?msigdbr::msigdbr for avilable subcategories)
clean	Use true to clean labels of genesets

Value

A gsets object

Examples

HALLMARK <- msigdb_gsets("Homo sapiens", "H", "")