Export hyp object to rmarkdown

Export hyp object to rmarkdown

hyp_to_rmd(
  hyp_obj,
  file_path,
  title = "Workflow Report",
  subtitle = "",
  author = "",
  header = "Results",
  versioning = TRUE,
  show_dots = TRUE,
  show_emaps = TRUE,
  show_hmaps = FALSE,
  show_tables = TRUE,
  hyp_dots_args = list(top = 15, val = "fdr"),
  hyp_emap_args = list(top = 25, val = "fdr", similarity_metric = "jaccard_similarity",
    similarity_cutoff = 0.2),
  hyp_hmap_args = list(top = 25, val = "fdr"),
  custom_rmd_config = NULL,
  custom_pre_content = NULL,
  custom_post_content = NULL,
  session_info = FALSE
)

Arguments

hyp_obj	A hyp object, multihyp object, or list of multihyp objects
file_path	A file path
title	Title of markdown report
subtitle	Subtitle of markdown report
author	Authors of markdown report
header	Header name of tabset section
versioning	Add versioning information
show_dots	Option to show dots plots in tabs
show_emaps	Option to show enrichment maps in tabs
show_hmaps	Option to show hiearchy maps in tabs
show_tables	Option to show table in tabs
hyp_dots_args	A list of keyword arguments passed to hyp_dots
hyp_emap_args	A list of keyword arguments passed to hyp_emap
hyp_hmap_args	A list of keyword arguments passed to hyp_hmap
custom_rmd_config	Replace configuration section of markdown report
custom_pre_content	Insert custom content before tabset section
custom_post_content	Insert custom content after tabset section
session_info	Use true to include session info