|
AEDAT.collapsed
|
AEDAT.collapsed |
|
AEDAT.collapsed.mad4k
|
AEDAT.collapsed.mad4k |
|
GeneSet-class
|
GeneSet |
|
HNSC_RNASeq_ES
|
Expression Set Object (TCGA-HNSC) |
|
HNSC_RNASeq_toy_ES
|
Toy Expression Set Object (TCGA-HNSC) |
|
HNSC_htseq_raw_counts_AEvsG1vsG3
|
HNSC_htseq_raw_counts_AEvsG1vsG3 |
|
HNSC_htseq_raw_counts_toy_AEvsG2
|
HNSC_htseq_raw_counts_toy_AEvsG2 |
|
VERBOSE()
|
subset an expression dataset by extracting genes based on their level of variation |
|
breast_loi_133p2
|
breast_loi_133p2 |
|
dm10
|
Chemical Pertubations Dataset |
|
ggheat.continuous()
|
ggheat.continuous helper function for plotting ggheatmap, see ggheat.continuous.single and
ggheat.continuous.group for examples of usage
|
|
ggheat.continuous.group()
|
ggheat.continuous.group ggheatmap function for plotting groups of esets, within-group column clustering
|
|
ggheat.continuous.single()
|
ggheat.continuous.single ggheatmap function for plotting a single eset
|
|
ggheat.make.groups()
|
ggheat.make.groups splits eset into list of esets based on phenotype label, do clustering within groups
|
|
heatmap.ggplot2()
|
heatmap.ggplot2 |
|
hello()
|
Hello, World! |
|
hyperEnrichment()
|
Carry out set enrichment test based on hyper-geometric distribution |
|
renamedBreastDB
|
renamedBreastDB |
|
zebrafish_cufflinks_counts_fpkm_eSet
|
zebrafish_cufflinks_counts_fpkm_eSet |
|
zebrafish_htseq_raw_counts_eSet
|
zebrafish_htseq_raw_counts_eSet |