Reference

All functions
BRENDA	BRENDA tissue ontology obo file. using version 2021/10
BRENDAExistName()	BRENDAExistName
GEOplatform	GEO platform names. updated 02/2024
OmicSigFromDifexp()	create an OmicSignature object from differential expsignaturession matrix
OmicSignature	OmicSignature R6 object
OmicSignatureCollection	OmicSignatureCollection R6 object
createMetadata()	template for creating a metadata list for an OmicSignature R6 object
diffAnalLm()	differential expression analysis using limma package
readJson()	read an OmicSignature object from json txt file created by writeJson()
replaceDifexpCol()	rename the columns of a differential analysis matrix for OmicSignature R6 object updated 10/2024
searchPlatform()	searchPlatform
searchSampleType()	searchSampleType
signatureVecToDF()	change a signature vector into a dataframe to be saved into OmicSignature object updated 10/2024
standardizeSigDF()	Standardize signature data frame
writeJson()	write OmicSignature object into json txt format