Package index
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BRENDA - BRENDA tissue ontology obo file. using version 2021/10
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BRENDAExistName() - search for a valid BRENDA ontology term to use for sample type
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OmicSigFromDifexp() - create an OmicSignature object from differential expsignaturession matrix
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OmicSignature - OmicSignature R6 object
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OmicSignatureCollection - OmicSignatureCollection R6 object
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createMetadata() - template for creating a metadata list for an OmicSignature R6 object
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diffAnalLm() - differential expression analysis using limma package
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predefined_assaytypes - predefined assay type list
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predefined_organisms - predefined organism list
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predefined_platforms - predefined platform list
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readJson() - read an OmicSignature object from json txt file created by writeJson()
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replaceDifexpCol() - rename the columns of a differential analysis matrix for OmicSignature R6 object
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searchAssayType() - search for an assay type to use
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searchOrganism() - search for a pre-defined organism name to use
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searchPlatform() - search for a platform name to use
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searchSampleType() - searchSampleType
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signatureVecToDF() - change a signature vector into a dataframe to be saved into OmicSignature object
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standardizeSigDF() - Standardize signature data frame
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writeJson() - write OmicSignature object into json txt format