Package index • OmicSignature

All functions

BRENDA: BRENDA tissue ontology obo file. using version 2021/10

BRENDAExistName(): BRENDAExistName

OmicSigFromDifexp(): create an OmicSignature object from differential expsignaturession matrix

OmicSignature: OmicSignature R6 object

OmicSignatureCollection: OmicSignatureCollection R6 object

createMetadata(): template for creating a metadata list for an OmicSignature R6 object

diffAnalLm(): differential expression analysis using limma package

predefined_organisms: predefined organism list

predefined_platforms: predefined platform list

readJson(): read an OmicSignature object from json txt file created by writeJson()

replaceDifexpCol(): rename the columns of a differential analysis matrix for OmicSignature R6 object updated 10/2024

searchOrganism(): searchOrganism

searchPlatform(): searchPlatform

searchSampleType(): searchSampleType

signatureVecToDF(): change a signature vector into a dataframe to be saved into OmicSignature object updated 10/2024

standardizeSigDF(): Standardize signature data frame

writeJson(): write OmicSignature object into json txt format