Package index
-
BRENDA - BRENDA tissue ontology obo file. using version 2021/10
-
BRENDAExistName() - search for a valid BRENDA ontology term to use for sample type
-
OmicS_searchAssayType() - search for an assay type to use
-
OmicS_searchOrganism() - search for a pre-defined organism name to use
-
OmicS_searchPlatform() - search for a platform name to use
-
OmicS_searchSampleType() - OmicS_searchSampleType
-
OmicSigFromDifexp() - create an OmicSignature object from differential expsignaturession matrix
-
OmicSignature - OmicSignature R6 object
-
OmicSignatureCollection - OmicSignatureCollection R6 object
-
createMetadata() - template for creating a metadata list for an OmicSignature R6 object
-
diffAnalLm() - differential expression analysis using limma package
-
predefined_assaytypes - predefined assay type list
-
predefined_organisms - predefined organism list
-
predefined_platforms - predefined platform list
-
readJson() - read an OmicSignature object from json txt file created by writeJson()
-
replaceDifexpCol() - rename the columns of a differential analysis matrix for OmicSignature R6 object
-
signatureVecToDF() - change a signature vector into a dataframe to be saved into OmicSignature object
-
standardizeSigDF() - Standardize signature data frame
-
writeJson() - write OmicSignature object into json txt format