searchSampleType.Rdsearch for BRENDA tissue name updated 02/2024
searchSampleType(x, file = BRENDA, contain_all = TRUE)matrix including search result
# search for results that contain all of "HEK" "293" and "T":
searchSampleType("HEK 293 T", contain_all = TRUE)
#> ID Name
#> 2180 BTO:0002181 HEK-293T cell
#> 3346 BTO:0003347 HEK-293 Tet-On 3G cell
#> 5021 BTO:0005025 HEK-293-TrkB cell
#> 5025 BTO:0005029 HEK-293FT cell
#> 5544 BTO:0005548 HEK-293ET cell
#> 6318 BTO:0006322 Jump-In-T-REx HEK293 cell
#> 6324 BTO:0006328 HEK-293T/17 cell
#> 6509 BTO:0006513 HEK-293-AT1 cell
searchSampleType(c("HEK", "293", "T"), contain_all = TRUE)
#> ID Name
#> 2180 BTO:0002181 HEK-293T cell
#> 3346 BTO:0003347 HEK-293 Tet-On 3G cell
#> 5021 BTO:0005025 HEK-293-TrkB cell
#> 5025 BTO:0005029 HEK-293FT cell
#> 5544 BTO:0005548 HEK-293ET cell
#> 6318 BTO:0006322 Jump-In-T-REx HEK293 cell
#> 6324 BTO:0006328 HEK-293T/17 cell
#> 6509 BTO:0006513 HEK-293-AT1 cell
searchSampleType(c("HEK 293", "T"), contain_all = TRUE)
#> ID Name
#> 2180 BTO:0002181 HEK-293T cell
#> 3346 BTO:0003347 HEK-293 Tet-On 3G cell
#> 5021 BTO:0005025 HEK-293-TrkB cell
#> 5025 BTO:0005029 HEK-293FT cell
#> 5544 BTO:0005548 HEK-293ET cell
#> 6318 BTO:0006322 Jump-In-T-REx HEK293 cell
#> 6324 BTO:0006328 HEK-293T/17 cell
#> 6509 BTO:0006513 HEK-293-AT1 cell
# search for results that contain any of "HEK", "SUM" or "HeLa":
searchSampleType("HEK SUM HeLa", contain_all = FALSE)
#> ID Name
#> 567 BTO:0000567 HeLa cell
#> 568 BTO:0000568 HeLa-S3 cell
#> 2771 BTO:0002772 chela
#> 3179 BTO:0003180 HeLa-80 cell
#> 3586 BTO:0003587 HeLa-MAGI-CCR5 cell
#> 3587 BTO:0003588 HeLa-MAGI cell
#> 3601 BTO:0003602 HeLa GFP-histone H2B cell
#> 5026 BTO:0005030 HeLa-229 cell
#> 5034 BTO:0005038 HeLa-LTRHIV-1-Luc cell
#> 5995 BTO:0005999 chelate leg
#> 6087 BTO:0006091 HeLa-HL3T1 cell
#> 25 BTO:0000024 abomasum
#> 273 BTO:0000272 colon transversum
#> 349 BTO:0000348 omasum
#> 362 BTO:0000361 stratum granulosum
#> 436 BTO:0000435 stratum spinosum
#> 615 BTO:0000615 corpus callosum
#> 1712 BTO:0001713 dorsum
#> 2017 BTO:0002018 corpus cavernosum clitoridis
#> 2018 BTO:0002019 corpus cavernosum penis
#> 3676 BTO:0003677 chorion frondosum
#> 4133 BTO:0004136 Kasumi-1 cell
#> 4422 BTO:0004425 stratum granulosum cerebelli
#> 4924 BTO:0004928 SUM-159PT cell
#> 5383 BTO:0005387 SUM-102PT cell
#> 5384 BTO:0005388 SUM-149 cell
#> 5385 BTO:0005389 SUM-44PE cell
#> 5386 BTO:0005390 SUM-52PE cell
#> 5387 BTO:0005391 SUM-225 cell
#> 5388 BTO:0005392 SUM-229 cell
#> 5389 BTO:0005393 SUM-190 cell
#> 5390 BTO:0005394 SUM-185 cell
#> 5450 BTO:0005454 corpus cavernosum
#> 5471 BTO:0005475 SUM-149PT cell
#> 5472 BTO:0005476 SUM-185PE cell
#> 5473 BTO:0005477 SUM-190PT cell
#> 5474 BTO:0005478 SUM-225CWN cell
#> 5475 BTO:0005479 SUM-229PE cell
#> 5499 BTO:0005503 corpus cavernosum smooth muscle
#> 5928 BTO:0005932 SUM cell
#> 5929 BTO:0005933 SUM-1315MO2 cell
#> 6264 BTO:0006268 organum vasculosum laminae terminalis
#> 8 BTO:0000007 HEK-293 cell
#> 2180 BTO:0002181 HEK-293T cell
#> 2523 BTO:0002524 HEK-293A cell
#> 2731 BTO:0002732 HEK-293CymR cell
#> 2973 BTO:0002974 HEK-293-EBNA cell
#> 3031 BTO:0003032 HEK-293F cell
#> 3032 BTO:0003033 HEK-293H cell
#> 3181 BTO:0003182 NHEK cell
#> 3262 BTO:0003263 HEK-AD293 cell
#> 3346 BTO:0003347 HEK-293 Tet-On 3G cell
#> 3467 BTO:0003468 HEK-293B2 cell
#> 3614 BTO:0003615 HEK-293 PEAKrapid cell
#> 4072 BTO:0004075 D1-HEK-293 cell
#> 4789 BTO:0004792 RHEK-1 cell
#> 5021 BTO:0005025 HEK-293-TrkB cell
#> 5025 BTO:0005029 HEK-293FT cell
#> 5544 BTO:0005548 HEK-293ET cell
#> 5835 BTO:0005839 HEK-293VnR cell
#> 6093 BTO:0006097 HEKa cell
#> 6318 BTO:0006322 Jump-In-T-REx HEK293 cell
#> 6324 BTO:0006328 HEK-293T/17 cell
#> 6418 BTO:0006422 HEK-293-APPswe cell
#> 6449 BTO:0006453 HEK-293S cell
#> 6509 BTO:0006513 HEK-293-AT1 cell
searchSampleType(c("HEK", "SUM", "HeLa"), contain_all = FALSE)
#> ID Name
#> 567 BTO:0000567 HeLa cell
#> 568 BTO:0000568 HeLa-S3 cell
#> 2771 BTO:0002772 chela
#> 3179 BTO:0003180 HeLa-80 cell
#> 3586 BTO:0003587 HeLa-MAGI-CCR5 cell
#> 3587 BTO:0003588 HeLa-MAGI cell
#> 3601 BTO:0003602 HeLa GFP-histone H2B cell
#> 5026 BTO:0005030 HeLa-229 cell
#> 5034 BTO:0005038 HeLa-LTRHIV-1-Luc cell
#> 5995 BTO:0005999 chelate leg
#> 6087 BTO:0006091 HeLa-HL3T1 cell
#> 25 BTO:0000024 abomasum
#> 273 BTO:0000272 colon transversum
#> 349 BTO:0000348 omasum
#> 362 BTO:0000361 stratum granulosum
#> 436 BTO:0000435 stratum spinosum
#> 615 BTO:0000615 corpus callosum
#> 1712 BTO:0001713 dorsum
#> 2017 BTO:0002018 corpus cavernosum clitoridis
#> 2018 BTO:0002019 corpus cavernosum penis
#> 3676 BTO:0003677 chorion frondosum
#> 4133 BTO:0004136 Kasumi-1 cell
#> 4422 BTO:0004425 stratum granulosum cerebelli
#> 4924 BTO:0004928 SUM-159PT cell
#> 5383 BTO:0005387 SUM-102PT cell
#> 5384 BTO:0005388 SUM-149 cell
#> 5385 BTO:0005389 SUM-44PE cell
#> 5386 BTO:0005390 SUM-52PE cell
#> 5387 BTO:0005391 SUM-225 cell
#> 5388 BTO:0005392 SUM-229 cell
#> 5389 BTO:0005393 SUM-190 cell
#> 5390 BTO:0005394 SUM-185 cell
#> 5450 BTO:0005454 corpus cavernosum
#> 5471 BTO:0005475 SUM-149PT cell
#> 5472 BTO:0005476 SUM-185PE cell
#> 5473 BTO:0005477 SUM-190PT cell
#> 5474 BTO:0005478 SUM-225CWN cell
#> 5475 BTO:0005479 SUM-229PE cell
#> 5499 BTO:0005503 corpus cavernosum smooth muscle
#> 5928 BTO:0005932 SUM cell
#> 5929 BTO:0005933 SUM-1315MO2 cell
#> 6264 BTO:0006268 organum vasculosum laminae terminalis
#> 8 BTO:0000007 HEK-293 cell
#> 2180 BTO:0002181 HEK-293T cell
#> 2523 BTO:0002524 HEK-293A cell
#> 2731 BTO:0002732 HEK-293CymR cell
#> 2973 BTO:0002974 HEK-293-EBNA cell
#> 3031 BTO:0003032 HEK-293F cell
#> 3032 BTO:0003033 HEK-293H cell
#> 3181 BTO:0003182 NHEK cell
#> 3262 BTO:0003263 HEK-AD293 cell
#> 3346 BTO:0003347 HEK-293 Tet-On 3G cell
#> 3467 BTO:0003468 HEK-293B2 cell
#> 3614 BTO:0003615 HEK-293 PEAKrapid cell
#> 4072 BTO:0004075 D1-HEK-293 cell
#> 4789 BTO:0004792 RHEK-1 cell
#> 5021 BTO:0005025 HEK-293-TrkB cell
#> 5025 BTO:0005029 HEK-293FT cell
#> 5544 BTO:0005548 HEK-293ET cell
#> 5835 BTO:0005839 HEK-293VnR cell
#> 6093 BTO:0006097 HEKa cell
#> 6318 BTO:0006322 Jump-In-T-REx HEK293 cell
#> 6324 BTO:0006328 HEK-293T/17 cell
#> 6418 BTO:0006422 HEK-293-APPswe cell
#> 6449 BTO:0006453 HEK-293S cell
#> 6509 BTO:0006513 HEK-293-AT1 cell
searchSampleType(c("HEK SUM", "HeLa"), contain_all = FALSE)
#> ID Name
#> 567 BTO:0000567 HeLa cell
#> 568 BTO:0000568 HeLa-S3 cell
#> 2771 BTO:0002772 chela
#> 3179 BTO:0003180 HeLa-80 cell
#> 3586 BTO:0003587 HeLa-MAGI-CCR5 cell
#> 3587 BTO:0003588 HeLa-MAGI cell
#> 3601 BTO:0003602 HeLa GFP-histone H2B cell
#> 5026 BTO:0005030 HeLa-229 cell
#> 5034 BTO:0005038 HeLa-LTRHIV-1-Luc cell
#> 5995 BTO:0005999 chelate leg
#> 6087 BTO:0006091 HeLa-HL3T1 cell
#> 25 BTO:0000024 abomasum
#> 273 BTO:0000272 colon transversum
#> 349 BTO:0000348 omasum
#> 362 BTO:0000361 stratum granulosum
#> 436 BTO:0000435 stratum spinosum
#> 615 BTO:0000615 corpus callosum
#> 1712 BTO:0001713 dorsum
#> 2017 BTO:0002018 corpus cavernosum clitoridis
#> 2018 BTO:0002019 corpus cavernosum penis
#> 3676 BTO:0003677 chorion frondosum
#> 4133 BTO:0004136 Kasumi-1 cell
#> 4422 BTO:0004425 stratum granulosum cerebelli
#> 4924 BTO:0004928 SUM-159PT cell
#> 5383 BTO:0005387 SUM-102PT cell
#> 5384 BTO:0005388 SUM-149 cell
#> 5385 BTO:0005389 SUM-44PE cell
#> 5386 BTO:0005390 SUM-52PE cell
#> 5387 BTO:0005391 SUM-225 cell
#> 5388 BTO:0005392 SUM-229 cell
#> 5389 BTO:0005393 SUM-190 cell
#> 5390 BTO:0005394 SUM-185 cell
#> 5450 BTO:0005454 corpus cavernosum
#> 5471 BTO:0005475 SUM-149PT cell
#> 5472 BTO:0005476 SUM-185PE cell
#> 5473 BTO:0005477 SUM-190PT cell
#> 5474 BTO:0005478 SUM-225CWN cell
#> 5475 BTO:0005479 SUM-229PE cell
#> 5499 BTO:0005503 corpus cavernosum smooth muscle
#> 5928 BTO:0005932 SUM cell
#> 5929 BTO:0005933 SUM-1315MO2 cell
#> 6264 BTO:0006268 organum vasculosum laminae terminalis
#> 8 BTO:0000007 HEK-293 cell
#> 2180 BTO:0002181 HEK-293T cell
#> 2523 BTO:0002524 HEK-293A cell
#> 2731 BTO:0002732 HEK-293CymR cell
#> 2973 BTO:0002974 HEK-293-EBNA cell
#> 3031 BTO:0003032 HEK-293F cell
#> 3032 BTO:0003033 HEK-293H cell
#> 3181 BTO:0003182 NHEK cell
#> 3262 BTO:0003263 HEK-AD293 cell
#> 3346 BTO:0003347 HEK-293 Tet-On 3G cell
#> 3467 BTO:0003468 HEK-293B2 cell
#> 3614 BTO:0003615 HEK-293 PEAKrapid cell
#> 4072 BTO:0004075 D1-HEK-293 cell
#> 4789 BTO:0004792 RHEK-1 cell
#> 5021 BTO:0005025 HEK-293-TrkB cell
#> 5025 BTO:0005029 HEK-293FT cell
#> 5544 BTO:0005548 HEK-293ET cell
#> 5835 BTO:0005839 HEK-293VnR cell
#> 6093 BTO:0006097 HEKa cell
#> 6318 BTO:0006322 Jump-In-T-REx HEK293 cell
#> 6324 BTO:0006328 HEK-293T/17 cell
#> 6418 BTO:0006422 HEK-293-APPswe cell
#> 6449 BTO:0006453 HEK-293S cell
#> 6509 BTO:0006513 HEK-293-AT1 cell