K2 object

This class is the output of K2preproc().

Slots

eMat

A numeric matrix comprising expression data used for partitioning

eMatDS

A numeric matrix comprising expression data used for differential expression

gMat

A numeric matrix comprising the output of runGeneSetScores().

results

A named list object containing results from each partition

colData

A data frame containing observation level data

meta

A named list containing different parameters used in workflow

genesets

A named list containing gene sets

gene2Pathway

Vector of collapsed gene set for which each gene belongs

dataMatrix

A numeric matrix used for different partitioning tasks

geneURL

A named list containing URLs for each gene

genesetURL

A named list containing URLs for each gene set