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Wrapper for hierarchical clustering

Source: R/hclustWrapper.R
hclustWrapper.Rd

This fuction is a wrapper for the hclust, dist, and cutree functions. It outputs a string of a concatenated vector of 1's and 2's indexed by column. This function is not meant to be run individually, but as a 'clustFunc' argument for running K2tax().

Usage

hclustWrapper(labels, features, K2res)

Arguments

labels

Vector of cohort values

features

List of features (genes) to include

K2res

A K2 class object.

Value

A character string of concatenated 1's and 2's pertaining to the cohort assignments.

References

Reed ER, Monti S (2021). “Multi-resolution characterization of molecular taxonomies in bulk and single-cell transcriptomics data.” Nucleic Acids Research. doi:10.1093/nar/gkab552 , https://pubmed.ncbi.nlm.nih.gov/34226941/.