Reformats the output of K2tax() to an object of class, dendrogram, which can be easily plotted.
K2dendro(K2res)
K2res | An object of class K2. The output of K2tax(). |
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An object of class dendrogram.
Reed ER, Monti S (2020). “Multi-resolution characterization of molecular taxonomies in bulk and single-cell transcriptomics data.” Bioinformatics. doi: 10.1101/2020.11.05.370197 , http://biorxiv.org/lookup/doi/10.1101/2020.11.05.370197.
#>#>#> #>#>#> #> #> #>#>#> #>#>#> #> #> #> #> #> #>#>#> #> #> #>data(sample.ExpressionSet) ## Pre-process and create K2 object K2res <- K2preproc(sample.ExpressionSet) ## Run K2 Taxonomer algorithm K2res <- K2tax(K2res, stabThresh=0.5) ## Create dendrogram object from K2 Taxonomer results K2dendro(K2res)#> 'dendrogram' with 2 branches and 26 members total, at height 4.381646