Generate interactive dashboard of K2 Taxonomer results

Source: R/K2dashboard.R

This function will generate an interactive dashboard of the annotated K=2 clustering results in a specified directory.

K2dashboard(
    K2res,
    analysis_name = "K2Taxonomer",
    about = TRUE,
    output_dir = "."
)

Arguments

K2res

Object of class K2.
analysis_name

Character string of the name of analysis to write files and generate title of report.
about

Logical. Whether to create an 'about' tab in the dashboard.
output_dir

Base directory to put report.

Value

Nothing. Writes files to a specified directory.

References

Reed ER, Monti S (2020). “Multi-resolution characterization of molecular taxonomies in bulk and single-cell transcriptomics data.” Bioinformatics. doi: 10.1101/2020.11.05.370197 , http://biorxiv.org/lookup/doi/10.1101/2020.11.05.370197.

Examples


## Read in K2 Taxonomer results
data(K2res)

## Generate interactive dashboard
K2dashboard(K2res, output_dir=tempdir())

#> Dashboard created in '/var/folders/s2/z1j__96s6q10f_6sbkyk79xh0000gn/T//RtmpGV03Hz/K2Taxonomer_2021_02_26_15_35_56_7227951'.