Convert metabolite names to RefMet via Metabolomics Workbench

Sends metabolite names to the Metabolomics Workbench RefMet converter and returns standardized RefMet annotations and related metadata.

refmet_convert(DF)

Arguments

DF

A data.frame whose first column contains metabolite names.

Value

A data.frame with RefMet mapping results. Column names are normalized; includes `metabolite` and `refmet_name` when available.

References

Metabolomics Workbench RefMet: https://www.metabolomicsworkbench.org/databases/refmet/