Enrichment analysis visualization

Enrichment analysis visualization

enrichment_plot(
  hypeR_GEM_enrichments,
  top = 20,
  abrv = 50,
  size_by = c("genesets", "significance", "none"),
  pval_cutoff = 1,
  fdr_cutoff = 1,
  val = c("fdr", "pval"),
  title = ""
)

Arguments

hypeR_GEM_enrichments

A hypeR_GEM_enrichments from single/multiple signatures, the output of "hypeR.GEM::enrichment()"

top

Limit number of genesets shown

abrv

Abbreviation length of geneset labels

size_by

Size dots by e.g. c("genesets", "significance", "none")

pval_cutoff

Filter results to be less than pval cutoff

fdr_cutoff

Filter results to be less than fdr cutoff

val

Choose significance value e.g. c("fdr", "pval")

title

Plot title

Value

a ggplot object