Create consensus network of resampling-based Markov network
Source:R/consensus_net_ggm.R
consensus_net_ggm.RdCreate consensus network of resampling-based Markov network
Usage
consensus_net_ggm(
ggm_networks,
CI = 0.95,
pos_cut = 0,
neg_cut = 0,
node_annot = NULL,
filter = c("pval", "fdr", "none"),
threshold = 0.05
)Arguments
- ggm_networks
the output from "ensemble_sggm.R"
- CI
confidence interval of interests
- pos_cut
a threshold for positive partial correlation
- neg_cut
a threshold for negative partial correlation
- node_annot
a data frame have at least two columns: 'id' and 'symbol', and 'id' must match the colnames in "mat"
- filter
filter method
- threshold
threshold of the selected filter