This class is the output of runK2Taxonomer() and K2preproc().

Slots

eSet

An Expression Set object

meta

A named list of K2Taxonomer information

dataMatrix

An P x N numeric matrix of data

results

A named list of K2Taxonomer partitioning reuslts

info

A data frame with rownames that match column names in dataMatrix

genesets

A named list of features in row names of dataMatrix

gene2Pathway

A vector of collapsed genesets names, mapping features to genesets

gSet

An Expression Set object

geneURL

A named vector of gene URLs

genesetURL

A named vector of geneset URLs