R/cadra_api.R
get_feature_set.RdGet a list of pre-processed feature sets available on CaDrA API Portal
get_feature_set(order_by = "asc")sort results by ascending (asc) or descending order (desc)
a data frame with two columns: description, feature_set_name
# Retrieve a list of feature sets available from CaDrA Portal
fs_list <- CaDrA.shiny::get_feature_set(
order_by = "asc"
)
# View top 6 rows
head(fs_list)
#> feature_set_name
#> CCLE SCNAs and Mutations CCLE SCNAs and Mutations
#> Simulated Feature Set Simulated Feature Set
#> TCGA BrCa SCNAs and Mutations TCGA BrCa SCNAs and Mutations
#> ...4 TCGA_ACC_2016_01_28_GISTIC_MUT_SIG
#> ...5 TCGA_BLCA_2016_01_28_GISTIC_MUT_SIG
#> ...6 TCGA_BRCA_2016_01_28_GISTIC_MUT_SIG
#> description
#> CCLE SCNAs and Mutations Somatic copy number alterations and mutations from CCLE. See ?CaDrA::CCLE_MUT_SCNA
#> Simulated Feature Set Simulated feature set comprises of 1000 genomic features and 100 sample profiles. This simulated data includes 10 left-skewed (i.e. True Positive or TP) and 990 uniformly-distributed (i.e. True Null or TN) features. See ?CaDrA::BRCA_GISTIC_MUT_SIG
#> TCGA BrCa SCNAs and Mutations Somatic copy number alterations and mutations from BRCA TCGA. See ?CaDrA::BRCA_GISTIC_MUT_SIG
#> ...4 ACC
#> ...5 BLCA
#> ...6 BRCA
#> collection
#> CCLE SCNAs and Mutations CCLE
#> Simulated Feature Set Simulated
#> TCGA BrCa SCNAs and Mutations TCGA
#> ...4 TCGA
#> ...5 TCGA
#> ...6 TCGA