Workflow Methods

CaDrA()

CaDrA Search

candidate_search()

Candidate Search

calc_rowscore()

Calculate row-wise scores of a given binary feature set based on a given scoring method

topn_best()

Top 'N' Best Meta-Features

prefilter_data()

Pre-filter features

generate_permutations()

Random permutation matrix generator

Plot Methods

meta_plot()

Candidate Drivers Search Plot

topn_plot()

Top 'N' Plot

permutation_plot()

Permutation Best Scores Plot

Data Objects

sim_FS

Simulated Genomic Data

sim_Scores

Simulated Input Scores

topn_list

Top-N Results for Simulated Data (sim_FS)

perm_res

Pre-computed permutation results for simulated data (sim_FS)

CCLE_MUT_SCNA

Genomic Data from CCLE MUT + SCNA

CTNBB1_reporter

Transcriptional Activity of Beta-Catenin in Cancers

BRCA_GISTIC_MUT_SIG

Genomic Data from TCGA BRCA MUT + GISTIC

TAZYAP_BRCA_ACTIVITY

YAP/TAZ Activity in TCGA BRCA dataset