searchTranscriptomicsFeatureSet

Search for a list of transcriptomics features in the database

Usage

searchTranscriptomicsFeatureSet(
  conn_handler = NULL,
  feature_name = NULL,
  organism = NULL,
  verbose = TRUE
)

Arguments

conn_handler

An R object obtained from SigRepo::newConnhandler() (required)

feature_name

A list of feature names to look up. Defaults to 'NULL', which will return all of the feature names in the database.

organism

A list of organism to look up. Defaults to 'NULL' which will return all of the organisms in the database.

verbose

Logical; whether or not to print the diagnostic messages. Defaults to 'TRUE'.

Examples

if (FALSE) { # \dontrun{

# Create a connection handler
conn_handler <- SigRepo::newConnHandler(
  dbname = "sigrepo", 
  host = "sigrepo.org", 
  port = 3306, 
  user = "your_username", 
  password = "your_password"
)

# Search for a list of transcriptomics features in the database
SigRepo::searchTranscriptomicsFeatureSet(
  conn_handler = conn_handler, 
  feature_name = "test_feature_name", 
  organism = "Mus musculus", 
  verbose = TRUE
)

} # }