Add signature to database with an assigned ID
Usage
addSignatureWithID(
conn_handler = NULL,
omic_signature,
assign_signature_id,
assign_user_name,
visibility = FALSE,
metabolomics_nomenclature = NULL,
check_difexp = TRUE,
verbose = FALSE
)Arguments
- conn_handler
An R object obtained from SigRepo::newConnhandler() (required)
- omic_signature
An OmicSignature R6 object from the OmicSignature package (required).
- assign_signature_id
Assign an unique ID to the uploaded signature (required)
- assign_user_name
Assign an unique user name to the uploaded signature (required)
- visibility
Logical; whether the uploaded collection should be visible and accessible to others, Defaults to 'FALSE'
- metabolomics_nomenclature
Optional metabolite dictionary for metabolomics signatures. One of refmet_id, refmet, hmdb, smiles, or inchikey.
- check_difexp
Logical; whether or not to check difexp table in the database. Defaults to 'TRUE'
- verbose
Logical; whether to print diagnostic messages. Defaults to 'TRUE'