addSampleType

Add sample types to database

Usage

addSampleType(conn_handler = NULL, sample_type_tbl, verbose = TRUE)

Arguments

conn_handler

An R object obtained from SigRepo::newConnhandler() (required)

sample_type_tbl

A Data Frame; must contain the following column names: sample_type, brenda_accession (required)

verbose

Logical; whether to print diagnostic messages. Defaults to 'TRUE'

Examples

if (FALSE) { # \dontrun{

# Create sample types table
sample_type_tbl <- base::data.frame(
  sample_type = c("sample_1","sample_2"),
  brenda_accession = c("accession_1", "accession_2")
)

# Create a connection handler
conn_handler <- SigRepo::newConnHandler(
  dbname = "sigrepo", 
  host = "sigrepo.org", 
  port = 3306, 
  user = "your_username", 
  password = "your_password"
)

# Add sample types to database
SigRepo::addSampleType(
  conn_handler = conn_handler,
  sample_type_tbl = sample_type_tbl,
  verbose = FALSE
)

} # }