addPhenotype

Add phenotypes to database

Usage

addPhenotype(conn_handler = NULL, phenotype_tbl, verbose = TRUE)

Arguments

conn_handler

An R object obtained from SigRepo::newConnhandler() (required)

phenotype_tbl

A Data Frame; Must contain the following column names: phenotype (required)

verbose

Logical; whether to print diagnostic messages. Defaults to 'TRUE'

Examples

if (FALSE) { # \dontrun{

# Create phenotypes table
phenotype_tbl <- base::data.frame(
  phenotype = c("phenotype_1", "phenotype_2")
)

# Create a connection handler
conn_handler <- SigRepo::newConnHandler(
  dbname = "sigrepo", 
  host = "sigrepo.org", 
  port = 3306, 
  user = "your_username", 
  password = "your_password"
)

# Add phenotypes to database
SigRepo::addPhenotype(
  conn_handler = conn_handler,
  phenotype_tbl = phenotype_tbl,
  verbose = TRUE
)

} # }